Publications

Bernard, H. U. 2013. Regulatory elements in the viral genome. Virology 445:197-204.
http://www.ncbi.nlm.nih.gov/pubmed/23725692

Kalantari, M., K. Osann, I. E. Calleja-Macias, S. Kim, B. Yan, S. Jordan, D. M. Chase, K. S. Tewari, and Bernard, H.U. 2014. Methylation of human papillomavirus 16, 18, 31, and 45 L2 and L1 genes and the cellular DAPK gene: Considerations for use as biomarkers of the progression of cervical neoplasia. Virology 448:314-321.
http://www.ncbi.nlm.nih.gov/pubmed/24314662

Kalantari, M., Bernard, H.U. 2015. Assessment of the HPV DNA methylation status in cervical lesions. Methods Molec. Biol. 1249, 267-280.
http://www.ncbi.nlm.nih.gov/pubmed/25348313

Angelini, M. M., B. W. Neuman, and M. J. Buchmeier. 2014. Untangling membrane rearrangement in the nidovirales. DNA and cell biology 33:122-127.
http://www.ncbi.nlm.nih.gov/pubmed/24410069

Bederka, L. H., C. J. Bonhomme, E. L. Ling, and M. J. Buchmeier. 2014. Arenavirus Stable Signal Peptide Is the Keystone Subunit for Glycoprotein Complex Organization. mBio 5.
http://www.ncbi.nlm.nih.gov/pubmed/25352624

Neuman, B. W., M. M. Angelini, and M. J. Buchmeier. 2014. Does form meet function in the coronavirus replicative organelle? Trends in microbiology 22:642-647.
http://www.ncbi.nlm.nih.gov/pubmed/25037114

Johnson, C., K. Sanders, and H. Fan. 2010. Jaagsiekte sheep retrovirus transformation in Madin-Darby canine kidney epithelial cell three-dimensional culture. J Virol 84:5379-5390.
http://www.ncbi.nlm.nih.gov/pubmed/20219922

Low, A., S. Datta, Y. Kuznetsov, S. Jahid, N. Kothari, A. McPherson, and H. Fan. 2007. Mutation in the glycosylated gag protein of murine leukemia virus results in reduced in vivo infectivity and a novel defect in viral budding or release. Journal of Virology 81:3685-3692.
http://www.ncbi.nlm.nih.gov/pubmed/17267509

Nitta, T., Y. Kuznetsov, A. McPherson, and H. Fan. 2010. Murine leukemia virus glycosylated Gag (gPr80gag) facilitates interferon-sensitive virus release through lipid rafts. Proc Natl Acad Sci U S A 107:1190-1195.
http://www.ncbi.nlm.nih.gov/pubmed?term=nitta%20mcpherson%20fan

Nitta, T., R. Tam, J. W. Kim, and H. Fan. 2011. The Cellular Protein La Functions in Enhancement of Virus Release through Lipid Rafts Facilitated by Murine Leukemia Virus Glycosylated Gag. mBio 2:1.
http://www.ncbi.nlm.nih.gov/pubmed/21343359

Gershon, P. D. 2010. Two tools for applying chromatographic retention data to the mass-based identification of peptides during hydrogen/deuterium exchange experiments by nano-liquid chromatography/matrix-assisted laser desorption/ionization mass spectrometry. Rapid communications in mass spectrometry : RCM 24:3373-3379.
http://www.ncbi.nlm.nih.gov/pubmed/21072792

Li, C. Z., M. Koter, X. Ye, S. F. Zhou, W. Chou, R. Luo, and P. D. Gershon. 2010. Widespread but Small-Scale Changes in the Structural and Dynamic Properties of Vaccinia Virus Poly(A) Polymerase upon Association with Its Processivity Factor in Solution. Biochemistry-Us 49:6247-6262.
http://www.ncbi.nlm.nih.gov/pubmed/20469877

Bonizzoni, M., M. Britton, O. Marinotti, W. A. Dunn, J. Fass, and A. A. James. 2013. Probing functional polymorphisms in the dengue vector, Aedes aegypti. Bmc Genomics 14.
http://www.ncbi.nlm.nih.gov/pubmed/24168143

Chagas, A. C., J. L. Ramirez, N. Jasinskiene, A. A. James, J. M. C. Ribeiro, O. Marinotti, and E. Calvo. 2014. Collagen-binding protein, Aegyptin, regulates probing time and blood feeding success in the dengue vector mosquito, Aedes aegypti. P Natl Acad Sci USA 111:6946-6951.
http://www.ncbi.nlm.nih.gov/pubmed/24778255

Li, J., X. H. Wang, G. W. Zhang, J. I. Githure, G. Y. Yan, and A. A. James. 2013. Genome-block expression-assisted association studies discover malaria resistance genes in Anopheles gambiae. P Natl Acad Sci USA 110:20675-20680.
http://www.ncbi.nlm.nih.gov/pubmed/24297936

Choi, S., D. Dunams, and S. C. Jiang. 2010. Transfer of cholera toxin genes from O1 to non-O1/O139 strains by vibriophages from California coastal waters. J Appl Microbiol 108:1015-1022.
http://www.ncbi.nlm.nih.gov/pubmed/19735324

Li, D., M. He, and S. C. Jiang. 2010. Detection of infectious adenoviruses in environmental waters by fluorescence-activated cell sorting assay. Appl Environ Microbiol 76:1442-1448.
http://www.ncbi.nlm.nih.gov/pubmed/20080992

Li, D., H. C. Shi, and S. C. Jiang. 2010. Concentration of viruses from environmental waters using nanoalumina fiber filters. Journal of microbiological methods 81:33-38.
http://www.ncbi.nlm.nih.gov/pubmed/20109500

Cho, S. K., and Y. J. Kwon. 2012. Simultaneous gene transduction and silencing using stimuli-responsive viral/nonviral chimeric nanoparticles. Biomaterials 33:3316-3323.
http://www.ncbi.nlm.nih.gov/pubmed/22281425

Cho, S. K., and Y. J. Kwon. 2012. Synthetically engineered viruses: Can synthetic chemistry tame the nature? Curr Opin Solid St M 16:276-286.
http://www.sciencedirect.com/science/article/pii/S1359028612000411

Wong, S., and Y. J. Kwon. 2011. Synthetically functionalized retroviruses produced from the bioorthogonally engineered cell surface. Bioconjug Chem 22:151-155.
http://www.ncbi.nlm.nih.gov/pubmed/21280590

Kuznetsov, Y., P. D. Gershon, and A. McPherson. 2008. Atomic force microscopy investigation of vaccinia virus structure. J Virol 82:7551-7566.
http://www.ncbi.nlm.nih.gov/pubmed/18508898

Nguyen, H. D., and C. L. Brooks, III. 2008. Generalized structural polymorphism in self-assembled viral particles. Nano Lett 8:4574-4581.
http://www.ncbi.nlm.nih.gov/pubmed/19367856

Nguyen, H. D., V. S. Reddy, and C. L. Brooks, III. 2007. Deciphering the kinetic mechanism of spontaneous self-assembly of icosahedral capsids. Nano Lett 7:338-344.
http://www.ncbi.nlm.nih.gov/pubmed/17297998

Nguyen, H. D., V. S. Reddy, and C. L. Brooks, III. 2009. Invariant polymorphism in virus capsid assembly. J Am Chem Soc 131:2606-2614.
http://www.ncbi.nlm.nih.gov/pubmed/19199626

Chu P, Deforce D., Pedersen IM, Kitada S., Reed JC., Kipps JC., Latent sensitivity to Fas-mediated apoptosis after CD40 ligation may explain activity of CD154 gene therapy in chronic lymphocytic leukemia., Proc Natl Acad Sci U S A. 2002,99:3854-9.
http://www.ncbi.nlm.nih.gov/pubmed/11891278

Pedersen IM & David M., microRNAs in the immune response, Cytokine, 2008, 43:391-4.
http://www.ncbi.nlm.nih.gov/pubmed/18701320

Pedersen IM, Wieland S, Cheng G, Violinia S, Croce CM, Chisari FV & David M., Interferon modulation of cellular miRs as a novel anti-viral mechanism, Nature, 2007, 449:919-22.
http://www.ncbi.nlm.nih.gov/pubmed/17943132

Beliakova-Bethell, N., L. J. Terry, V. Bilanchone, R. DaSilva, K. Nagashima, S. R. Wente, and S. Sandmeyer. 2009. Ty3 nuclear entry is initiated by viruslike particle docking on GLFG nucleoporins. J Virol 83:11914-11925.
http://www.ncbi.nlm.nih.gov/pubmed/19759143

Clemens, K., L. Larsen, M. Zhang, Y. Kuznetsov, V. Bilanchone, A. Randall, A. Harned, R. Dasilva, K. Nagashima, A. McPherson, P. Baldi, and S. Sandmeyer. 2011. The TY3 Gag3 spacer controls intracellular condensation and uncoating. J Virol 85:3055-3066.
http://www.ncbi.nlm.nih.gov/pubmed/21270167

Larsen, L. S., Y. Kuznetsov, A. McPherson, G. W. Hatfield, and S. Sandmeyer. 2008. TY3 GAG3 protein forms ordered particles in Escherichia coli. Virology 370:223-227.
http://www.ncbi.nlm.nih.gov/pubmed/17964628

Sandmeyer, S. B., and K. A. Clemens. 2010. Function of a retrotransposon nucleocapsid protein. RNA Biol 7:642-654.
http://www.ncbi.nlm.nih.gov/pubmed/21189452

Ou, M., and R. M. Sandri-Goldin. 2013. Inhibition of cdk9 during Herpes Simplex Virus 1 Infection Impedes Viral Transcription. PLoS One 8.
http://www.ncbi.nlm.nih.gov/pubmed/24205359

Souki, S. K., F. P. Hernandez, and R. M. Sandri-Goldin. 2011. Arginine Methylation of the RGG Box Does Not Appear To Regulate ICP27 Import during Herpes Simplex Virus Infection. J Virol 85:6809-6813.
http://www.ncbi.nlm.nih.gov/pubmed/21543499

Tian, X. C., G. Devi-Rao, A. P. Golovanov, and R. M. Sandri-Goldin. 2013. The Interaction of the Cellular Export Adaptor Protein Aly/REF with ICP27 Contributes to the Efficiency of Herpes Simplex Virus 1 mRNA Export. Journal of Virology 87:7210-7217.
http://www.ncbi.nlm.nih.gov/pubmed/23637401

Chase, A. J., S. Daijogo, and B. L. Semler. 2014. Inhibition of Poliovirus-Induced Cleavage of Cellular Protein PCBP2 Reduces the Levels of Viral RNA Replication. Journal of Virology 88:3192-3201.
http://www.ncbi.nlm.nih.gov/pubmed/24371074

Rozovics, J. M., A. J. Chase, A. L. Cathcart, W. Chou, P. D. Gershon, S. Palusa, J. Wilusz, and B. L. Semler. 2012. Picornavirus modification of a host mRNA decay protein. mBio 3.
http://www.ncbi.nlm.nih.gov/pubmed/23131833

Virgen-Slane, R., J. M. Rozovics, K. D. Fitzgerald, T. Ngo, W. Chou, G. J. van der Heden van Noort, D. V. Filippov, P. D. Gershon, and B. L. Semler. 2012. An RNA virus hijacks an incognito function of a DNA repair enzyme. Proc Natl Acad Sci U S A 109:14634-14639.
http://www.ncbi.nlm.nih.gov/pubmed/22908287

Villarreal, L. P. 2014. Force for ancient and recent life: viral and stem-loop RNA consortia promote life. Annals of the New York Academy of Sciences.  ISSN 0077-8923.
http://www.ncbi.nlm.nih.gov/pubmed/25376951

Chentoufi, A. A., E. Kritzer, M. V. Tran, G. Dasgupta, C. H. Lim, D. C. Yu, R. E. Afifi, X. Jiang, D. Carpenter, N. Osorio, C. Hsiang, A. B. Nesburn, S. L. Wechsler, and L. BenMohamed. 2011. The herpes simplex virus 1 latency-associated transcript promotes functional exhaustion of virus-specific CD8+ T cells in latently infected trigeminal ganglia: a novel immune evasion mechanism. J Virol 85:9127-9138.
http://www.ncbi.nlm.nih.gov/pubmed/21715478

Jiang, X. Z., A. A. Chentoufi, C. H. Hsiang, D. Carpenter, N. Osorio, L. BenMohamed, N. W. Fraser, C. Jones, and S. L. Wechsler. 2011. The Herpes Simplex Virus Type 1 Latency-Associated Transcript Can Protect Neuron-Derived C1300 and Neuro2A Cells from Granzyme B-Induced Apoptosis and CD8 T-Cell Killing. J Virol 85:2325-2332.
http://www.ncbi.nlm.nih.gov/pubmed/21177822

Perng, G. C., C. Jones, J. Ciacci-Zanella, M. Stone, G. Henderson, A. Yukht, S. M. Slanina, F. M. Hofman, H. Ghiasi, A. B. Nesburn, and S. L. Wechsler. 2000. Virus-induced neuronal apoptosis blocked by the herpes simplex virus latency-associated transcript. Science 287:1500-1503.
http://www.ncbi.nlm.nih.gov/pubmed/10688801

Arter, J. A., D. K. Taggart, T. M. McIntire, R. M. Penner, and G. A. Weiss. 2010. Virus-PEDOT Nanowires for Biosensing. Nano Lett 10:4858-4862.
http://www.ncbi.nlm.nih.gov/pubmed/21038915

Hajduczki, A., S. Majumdar, M. Fricke, I. A. Brown, and G. A. Weiss. 2011. Solubilization of a membrane protein by combinatorial supercharging. ACS Chem Biol 6:301-307.
http://www.ncbi.nlm.nih.gov/pubmed/21192634

Vithayathil, R., R. M. Hooy, M. J. Coco, and G. A. Weiss. 2011. The Scope of Phage Display for Membrane Proteins. J Mol Biol (in press).
http://www.ncbi.nlm.nih.gov/pubmed/22037583

Barr, J. J., R. Auro, M. Furlan, K. L. Whiteson, M. L. Erb, J. Pogliano, A. Stotland, R. Wolkowicz, A. S. Cutting, K. S. Doran, P. Salamon, M. Youle, and F. Rohwer. 2013. Bacteriophage adhering to mucus provide a non-host-derived immunity. P Natl Acad Sci USA 110:10771-10776.
http://www.pnas.org/content/110/26/10771.full

Reyes, A., N. P. Semenkovich, K. Whiteson, F. Rohwer, and J. I. Gordon. 2012. Going viral: next-generation sequencing applied to phage populations in the human gut. Nat Rev Microbiol 10:607-617.
http://www.nature.com/nrmicro/journal/v10/n9/full/nrmicro2853.html

Whiteson, K. L., B. Bailey, M. Bergkessel, D. Conrad, L. Delhaes, B. Felts, J. K. Harris, R. Hunter, Y. W. Lim, H. Maughan, R. Quinn, P. Salamon, J. Sullivan, B. D. Wagner, and P. B. Rainey. 2014. The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography. American journal of respiratory and critical care medicine 189:1309-1315.
http://authors.library.caltech.edu/46555/1/Whiteson_2014p1309.pdf