Publications

Bernard, H. U., R. D. Burk, Z. Chen, K. van Doorslaer, H. Hausen, and E. M. de Villiers. 2010. Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments. Virology 401:70-79.
http://www.ncbi.nlm.nih.gov/pubmed/20206957

Kalantari, M., D. M. Chase, K. S. Tewari, and H. U. Bernard. 2010. Recombination of human papillomavirus-16 and host DNA in exfoliated cervical cells: a pilot study of L1 gene methylation and chromosomal integration as biomarkers of carcinogenic progression. J Med Virol 82:311-320.
http://www.ncbi.nlm.nih.gov/pubmed/20029805

Luevano, M., H. U. Bernard, H. A. Barrera-Saldana, V. Trevino, A. Garcia-Carranca, L. L. Villa, B. J. Monk, X. Tan, D. H. Davies, P. L. Felgner, and M. Kalantari. 2010. High-throughput profiling of the humoral immune responses against thirteen human papillomavirus types by proteome microarrays. Virology 405:31-40.
http://www.ncbi.nlm.nih.gov/pubmed/20554302

Bonhomme, C. J., A. A. Capul, E. J. Lauron, L. H. Bederka, K. A. Knopp, and M. J. Buchmeier. 2011. Glycosylation modulates arenavirus glycoprotein expression and function. Virology 409:223-233.
http://www.ncbi.nlm.nih.gov/pubmed/21056893

Botten, J., J. L. Whitton, P. Barrowman, J. Sidney, J. K. Whitmire, J. Alexander, M. F. Kotturi, A. Sette, and M. J. Buchmeier. 2010. A multivalent vaccination strategy for the prevention of Old World arenavirus infection in humans. J Virol 84:9947-9956.
http://www.ncbi.nlm.nih.gov/pubmed/20668086

Neuman, B. W., L. H. Bederka, D. A. Stein, J. P. C. Ting, H. M. Moulton, and M. J. Buchmeier. 2011. Development of Peptide-Conjugated Morpholino Oligomers as Pan-Arenavirus Inhibitors. Antimicrob Agents Ch 55:4631-4638.
http://www.ncbi.nlm.nih.gov/pubmed/21825302

Johnson, C., K. Sanders, and H. Fan. 2010. Jaagsiekte sheep retrovirus transformation in Madin-Darby canine kidney epithelial cell three-dimensional culture. J Virol 84:5379-5390.
http://www.ncbi.nlm.nih.gov/pubmed/20219922

Low, A., S. Datta, Y. Kuznetsov, S. Jahid, N. Kothari, A. McPherson, and H. Fan. 2007. Mutation in the glycosylated gag protein of murine leukemia virus results in reduced in vivo infectivity and a novel defect in viral budding or release. Journal of Virology 81:3685-3692.
http://www.ncbi.nlm.nih.gov/pubmed/17267509

Nitta, T., Y. Kuznetsov, A. McPherson, and H. Fan. 2010. Murine leukemia virus glycosylated Gag (gPr80gag) facilitates interferon-sensitive virus release through lipid rafts. Proc Natl Acad Sci U S A 107:1190-1195.
http://www.ncbi.nlm.nih.gov/pubmed?term=nitta%20mcpherson%20fan

Nitta, T., R. Tam, J. W. Kim, and H. Fan. 2011. The Cellular Protein La Functions in Enhancement of Virus Release through Lipid Rafts Facilitated by Murine Leukemia Virus Glycosylated Gag. mBio 2:1.
http://www.ncbi.nlm.nih.gov/pubmed/21343359

Gershon, P. D. 2010. Two tools for applying chromatographic retention data to the mass-based identification of peptides during hydrogen/deuterium exchange experiments by nano-liquid chromatography/matrix-assisted laser desorption/ionization mass spectrometry. Rapid communications in mass spectrometry : RCM 24:3373-3379.
http://www.ncbi.nlm.nih.gov/pubmed/21072792

Li, C. Z., M. Koter, X. Ye, S. F. Zhou, W. Chou, R. Luo, and P. D. Gershon. 2010. Widespread but Small-Scale Changes in the Structural and Dynamic Properties of Vaccinia Virus Poly(A) Polymerase upon Association with Its Processivity Factor in Solution. Biochemistry-Us 49:6247-6262.
http://www.ncbi.nlm.nih.gov/pubmed/20469877

Carballar-Lejarazú, R., Jasinskiene, N. and James, A.A. (2013) Exogenous gypsy insulator sequences modulate transgene expression in the malaria vector mosquito, Anopheles stephensi. PNAS, 110: 7176-7181.
http://www.pnas.org/content/110/18/7176.short

DeGennaro, M., McBride, C.S., Seeholzer, L., Nakagawa, T., Dennis, E.J., Goldman, C., Jasinskiene, N., James, A.A. and Vosshall, L.B. (2013) orco mutant mosquitoes lose strong preference for humans and are not repelled by volatile DEET. Nature, 498 (7455):  487-91.
http://www.nature.com/nature/journal/v498/n7455/full/nature12206.html

Marinotti, O, Jasinskiene, N., Fazekas, A., Scaife, S., Fu, G., Mattingly, S.T., Chow, K, Brown, D.M. and James, A.A. (2013) Development of a population suppression strain of the human malaria vector mosquito, Anopheles stephensi. Malaria Journal 26, 142.
http://www.biomedcentral.com/content/pdf/1475-2875-12-142.pdf

Choi, S., D. Dunams, and S. C. Jiang. 2010. Transfer of cholera toxin genes from O1 to non-O1/O139 strains by vibriophages from California coastal waters. J Appl Microbiol 108:1015-1022.
http://www.ncbi.nlm.nih.gov/pubmed/19735324

Li, D., M. He, and S. C. Jiang. 2010. Detection of infectious adenoviruses in environmental waters by fluorescence-activated cell sorting assay. Appl Environ Microbiol 76:1442-1448.
http://www.ncbi.nlm.nih.gov/pubmed/20080992

Li, D., H. C. Shi, and S. C. Jiang. 2010. Concentration of viruses from environmental waters using nanoalumina fiber filters. Journal of microbiological methods 81:33-38.
http://www.ncbi.nlm.nih.gov/pubmed/20109500

Kwon, Y. J., G. Hung, W. F. Anderson, C. A. Peng, and H. Yu. 2003. Determination of infectious retrovirus concentration from colony-forming assay with quantitative analysis. J Virol 77:5712-5720.
http://www.ncbi.nlm.nih.gov/pubmed/12719564

Kwon, Y. J., and C. A. Peng. 2008. Differential interaction of retroviral vector with target cell: quantitative effect of cellular receptor, soluble proteoglycan, and cell type on gene delivery efficiency. Tissue engineering. Part A 14:1497-1506.
http://www.ncbi.nlm.nih.gov/pubmed/18620488

Wong, S., and Y. J. Kwon. 2011. Synthetically functionalized retroviruses produced from the bioorthogonally engineered cell surface. Bioconjug Chem 22:151-155.
http://www.ncbi.nlm.nih.gov/pubmed/21280590

Kuznetsov, Y., P. D. Gershon, and A. McPherson. 2008. Atomic force microscopy investigation of vaccinia virus structure. J Virol 82:7551-7566.
http://www.ncbi.nlm.nih.gov/pubmed/18508898

Nguyen, H. D., and C. L. Brooks, III. 2008. Generalized structural polymorphism in self-assembled viral particles. Nano Lett 8:4574-4581.
http://www.ncbi.nlm.nih.gov/pubmed/19367856

Nguyen, H. D., V. S. Reddy, and C. L. Brooks, III. 2007. Deciphering the kinetic mechanism of spontaneous self-assembly of icosahedral capsids. Nano Lett 7:338-344.
http://www.ncbi.nlm.nih.gov/pubmed/17297998

Nguyen, H. D., V. S. Reddy, and C. L. Brooks, III. 2009. Invariant polymorphism in virus capsid assembly. J Am Chem Soc 131:2606-2614.
http://www.ncbi.nlm.nih.gov/pubmed/19199626

Chu P, Deforce D., Pedersen IM, Kitada S., Reed JC., Kipps JC., Latent sensitivity to Fas-mediated apoptosis after CD40 ligation may explain activity of CD154 gene therapy in chronic lymphocytic leukemia., Proc Natl Acad Sci U S A. 2002,99:3854-9.
http://www.ncbi.nlm.nih.gov/pubmed/11891278

Pedersen IM & David M., microRNAs in the immune response, Cytokine, 2008, 43:391-4.
http://www.ncbi.nlm.nih.gov/pubmed/18701320

Pedersen IM, Wieland S, Cheng G, Violinia S, Croce CM, Chisari FV & David M., Interferon modulation of cellular miRs as a novel anti-viral mechanism, Nature, 2007, 449:919-22.
http://www.ncbi.nlm.nih.gov/pubmed/17943132

Beliakova-Bethell, N., L. J. Terry, V. Bilanchone, R. DaSilva, K. Nagashima, S. R. Wente, and S. Sandmeyer. 2009. Ty3 nuclear entry is initiated by viruslike particle docking on GLFG nucleoporins. J Virol 83:11914-11925.
http://www.ncbi.nlm.nih.gov/pubmed/19759143

Clemens, K., L. Larsen, M. Zhang, Y. Kuznetsov, V. Bilanchone, A. Randall, A. Harned, R. Dasilva, K. Nagashima, A. McPherson, P. Baldi, and S. Sandmeyer. 2011. The TY3 Gag3 spacer controls intracellular condensation and uncoating. J Virol 85:3055-3066.
http://www.ncbi.nlm.nih.gov/pubmed/21270167

Larsen, L. S., Y. Kuznetsov, A. McPherson, G. W. Hatfield, and S. Sandmeyer. 2008. TY3 GAG3 protein forms ordered particles in Escherichia coli. Virology 370:223-227.
http://www.ncbi.nlm.nih.gov/pubmed/17964628

Sandmeyer, S. B., and K. A. Clemens. 2010. Function of a retrotransposon nucleocapsid protein. RNA Biol 7:642-654.
http://www.ncbi.nlm.nih.gov/pubmed/21189452

Corbin-Lickfett, K. A., S. Rojas, L. Li, M. J. Cocco, and R. M. Sandri-Goldin. 2010. ICP27 phosphorylation site mutants display altered functional interactions with cellular export factors Aly/REF and TAP/NXF1 but are able to bind herpes simplex virus 1 RNA. J Virol 84:2212-2222.
http://www.ncbi.nlm.nih.gov/pubmed/20015986

Hernandez, F. P., and R. M. Sandri-Goldin. 2010. Head-to-Tail Intramolecular Interaction of Herpes Simplex Virus Type 1 Regulatory Protein ICP27 Is Important for Its Interaction with Cellular mRNA Export Receptor TAP/NXF1. mBio 1.
http://www.ncbi.nlm.nih.gov/pubmed/21060739

Johnson, L. A., and R. M. Sandri-Goldin. 2009. Efficient nuclear export of herpes simplex virus 1 transcripts requires both RNA binding by ICP27 and ICP27 interaction with TAP/NXF1. J Virol 83:1184-1192.
http://www.ncbi.nlm.nih.gov/pubmed/19019956

Souki, S. K., P. D. Gershon, and R. M. Sandri-Goldin. 2009. Arginine methylation of the ICP27 RGG box regulates ICP27 export and is required for efficient herpes simplex virus 1 replication. J Virol 83:5309-5320.
http://www.ncbi.nlm.nih.gov/pubmed/19321610

Bedard, K. M., S. Daijogo, and B. L. Semler. 2007. A nucleo-cytoplasmic SR protein functions in viral IRES-mediated translation initiation. EMBO J 26:459-467.
http://www.ncbi.nlm.nih.gov/pubmed/17183366

Fitzgerald, K. D., and B. L. Semler. 2011. Re-localization of cellular protein SRp20 during poliovirus infection: bridging a viral IRES to the host cell translation apparatus. PLoS pathogens 7:e1002127.
http://www.ncbi.nlm.nih.gov/pubmed/21779168

Perera, R., S. Daijogo, B. L. Walter, J. H. Nguyen, and B. L. Semler. 2007. Cellular protein modification by poliovirus: the two faces of poly(rC)-binding protein. J Virol 81:8919-8932.
http://www.ncbi.nlm.nih.gov/pubmed/17581994

Villarreal, L. P. 2011. Viral ancestors of antiviral systems. Viruses 3:1933-1968.
http://www.mdpi.com/1999-4915/3/10/1933/

Villarreal, L., and F. Ryan. 2011 (in press). Viruses in host evolution: general principles and future extrapolations. Curr Top in Virol.
Villarreal-Ryan Curr Top in Vir Review 2011

Villarreal, L. P., and G. Witzany. 2010. Viruses are essential agents within the roots and stem of the tree of life. J Theoretical Biol 262:698-710.
http://www.ncbi.nlm.nih.gov/pubmed/19833132

Chentoufi, A. A., E. Kritzer, M. V. Tran, G. Dasgupta, C. H. Lim, D. C. Yu, R. E. Afifi, X. Jiang, D. Carpenter, N. Osorio, C. Hsiang, A. B. Nesburn, S. L. Wechsler, and L. BenMohamed. 2011. The herpes simplex virus 1 latency-associated transcript promotes functional exhaustion of virus-specific CD8+ T cells in latently infected trigeminal ganglia: a novel immune evasion mechanism. J Virol 85:9127-9138.
http://www.ncbi.nlm.nih.gov/pubmed/21715478

Jiang, X. Z., A. A. Chentoufi, C. H. Hsiang, D. Carpenter, N. Osorio, L. BenMohamed, N. W. Fraser, C. Jones, and S. L. Wechsler. 2011. The Herpes Simplex Virus Type 1 Latency-Associated Transcript Can Protect Neuron-Derived C1300 and Neuro2A Cells from Granzyme B-Induced Apoptosis and CD8 T-Cell Killing. J Virol 85:2325-2332.
http://www.ncbi.nlm.nih.gov/pubmed/21177822

Perng, G. C., C. Jones, J. Ciacci-Zanella, M. Stone, G. Henderson, A. Yukht, S. M. Slanina, F. M. Hofman, H. Ghiasi, A. B. Nesburn, and S. L. Wechsler. 2000. Virus-induced neuronal apoptosis blocked by the herpes simplex virus latency-associated transcript. Science 287:1500-1503.
http://www.ncbi.nlm.nih.gov/pubmed/10688801

Arter, J. A., D. K. Taggart, T. M. McIntire, R. M. Penner, and G. A. Weiss. 2010. Virus-PEDOT Nanowires for Biosensing. Nano Lett 10:4858-4862.
http://www.ncbi.nlm.nih.gov/pubmed/21038915

Hajduczki, A., S. Majumdar, M. Fricke, I. A. Brown, and G. A. Weiss. 2011. Solubilization of a membrane protein by combinatorial supercharging. ACS Chem Biol 6:301-307.
http://www.ncbi.nlm.nih.gov/pubmed/21192634

Vithayathil, R., R. M. Hooy, M. J. Coco, and G. A. Weiss. 2011. The Scope of Phage Display for Membrane Proteins. J Mol Biol (in press).
http://www.ncbi.nlm.nih.gov/pubmed/22037583